Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_4000Conserved hypothetical protein. (295 aa)    
Predicted Functional Partners:
BT_4001
Putative chromosome partitioning protein parB; Belongs to the ParB family.
  
    0.829
BT_4002
ATPase, ParA family.
  
    0.822
BT_2133
Conserved hypothetical protein.
  
    0.797
BT_3999
Membrane-bound lytic murein transglycosylase D presursor.
  
    0.781
BT_3247
Conserved hypothetical protein; Tetratricopeptide-like helical.
  
    0.769
BT_4376
Conserved hypothetical protein.
 
    0.760
BT_0328
Conserved hypothetical protein.
  
    0.756
BT_3578
Conserved hypothetical protein.
  
    0.753
BT_4367
Putative outer membrane protein.
  
    0.749
BT_0968
Conserved hypothetical protein.
  
     0.747
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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