Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BT_4113SusD homolog. (619 aa)    
Predicted Functional Partners:
BT_4114
SusC homolog.
 
 
 0.990
BT_4112
Putative Fibronectin.
 
    0.968
BT_4115
Pectate lyase.
 
    0.821
BT_4116
Pectate lyase.
 
    0.821
BT_4123
exo-poly-alpha-D-galacturonosidase precursor; Belongs to the glycosyl hydrolase 28 family.
 
 
 0.777
BT_2096
Putative transcriptional regulator; FucR homolog.
  
  
 0.678
BT_4660
SusC homolog.
 
   0.671
BT_4187
exo-poly-alpha-D-galacturonosidase precursor; Belongs to the glycosyl hydrolase 28 family.
 
   0.665
BT_4109
Putative pectinesterase precursor.
  
  
 0.653
BT_4164
SusC homolog.
 
  
 0.652
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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