Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BT_4142Putative AraC-type regulator. (375 aa)    
Predicted Functional Partners:
BT_4143
Putative iron-sulfur cluster binding protein.
  
    0.784
BT_1906
Transcriptional regulator.
 
 
 0.605
BT_1390
Conserved hypothetical protein.
 
    0.591
BT_3122
Transcriptional regulator.
 
   0.589
BT_2999
Helicase IV.
  
    0.540
BT_4655
Conserved hypothetical protein.
  
     0.538
BT_3768
Transcriptional regulator.
  
    0.504
BT_3660
Transcriptional regulator.
 
 
 0.479
BT_2910
Transcriptional regulator.
  
     0.454
BT_4396
Transcriptional regulator.
 
   0.453
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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