Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_4244Conserved hypothetical protein. (857 aa)    
Predicted Functional Partners:
BT_4245
Conserved hypothetical protein.
  
    0.825
BT_4246
SusD homolog.
 
    0.810
BT_2937
Putative glycosyltransferase.
  
     0.760
BT_3169
Alpha-xylosidase.
  
  
 0.735
BT_4685
Conserved hypothetical protein.
  
     0.727
BT_4247
SusC homolog.
 
    0.722
BT_2323
Conserved hypothetical protein.
  
    0.703
BT_2806
SusD homolog.
  
    0.694
BT_4492
Conserved hypothetical protein.
  
    0.675
BT_1690
TPR domain-containing protein.
  
    0.646
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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