Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_4286Hypothetical protein. (259 aa)    
Predicted Functional Partners:
BT_4287
Hypothetical protein.
  
    0.743
BT_4285
Hypothetical protein.
  
    0.660
BT_4284
Hypothetical protein.
  
    0.634
BT_4288
ABC transporter ATP-binding protein.
  
    0.534
BT_4289
Chromosomal hemolysin secretion protein D homolog.
  
    0.458
BT_4283
Conserved hypothetical protein.
  
    0.413
BT_4282
Glycoside transferase family 4.
  
    0.402
BT_4281
Glycoside transferase family 2.
  
    0.400
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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