Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BT_4338CRP family transcriptional regulator with cAMP-binding domain. (233 aa)    
Predicted Functional Partners:
BT_4337
Beta-hexosaminidase precursor.
  
    0.637
BT_4333
Conserved hypothetical protein.
  
    0.595
BT_4339
Glutamine synthetase.
  
  
 0.586
BT_1635
Two-component system sensor histidine kinase/response regulator, hybrid (one-component system).
  
 
 0.529
BT_1675
Conserved protein, with a conserved TPR domain.
 
 0.528
BT_4303
Glycogen debranching enzyme-related protein (4-alpha-glucanotransferase).
  
 
 0.516
BT_2228
Conserved hypothetical protein.
  
    0.507
BT_3172
Two-component system sensor histidine kinase/response regulator, hybrid (one-component system).
  
 
 0.503
BT_1272
FucR.
    
 
 0.486
BT_0771
1,4-alpha-glucan branching enzyme (isoamylase or pullulanase type II).
  
 
 0.474
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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