Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_4341Conserved hypothetical protein. (719 aa)    
Predicted Functional Partners:
BT_3727
Conserved hypothetical protein.
  
    0.767
BT_4306
Conserved hypothetical protein.
  
    0.766
BT_2253
Putative outer membrane protein TolC.
  
    0.755
BT_2228
Conserved hypothetical protein.
  
    0.737
BT_3252
Putative transmembrane protein.
  
    0.728
BT_3615
Conserved hypothetical protein.
  
    0.728
BT_4371
Peptidyl-prolyl cis-trans isomerase.
  
    0.725
BT_0809
Putative lipoprotein.
  
    0.717
BT_1359
Tetratricopeptide repeat family protein.
  
    0.715
BT_3949
Conserved hypothetical protein.
  
    0.713
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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