Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BT_4344Conserved hypothetical protein, putative DNA helicase; May be part of a single gene with BT4343. (1605 aa)    
Predicted Functional Partners:
BT_4343
Putative DNA helicase; May be part of a single gene with BT4344.
    0.990
BT_1821
Transposase.
 
    0.624
BT_4010
Conserved hypothetical protein.
 
    0.612
BT_2222
Transposase.
 
    0.607
RpsA
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.585
BT_1931
Putative type IIS restriction/modification enzyme.
  
    0.574
BT_4627
DNA modification methylase.
  
    0.574
BT_4075
Putative lipolytic enzyme, G-D-S-L family.
  
    0.555
BT_4096
Lipolytic enzyme, G-D-S-L family; Putative lipase/acylhydrolase with GDSL-like motif domain.
  
    0.555
rnz
Conserved hypothetical protein, with a Metallo-beta-lactamase superfamily domain; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
  
    0.405
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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