Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_4396Transcriptional regulator. (295 aa)    
Predicted Functional Partners:
BT_4398
TPR domain-containing protein.
 
    0.888
BT_2973
Transcriptional regulator.
 
   0.735
BT_2120
Transcriptional regulator.
 
   0.703
BT_1385
Transcriptional regulator.
 
   0.677
BT_2792
AraC/XylS family transcriptional regulator.
 
   0.654
BT_3609
Transcriptional regulator.
 
 
 0.627
BT_0995
Transcription regulator, AraC-type.
 
   0.623
BT_4397
xylose/H+ symporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
 
   
 0.623
BT_2957
Transcriptional regulator.
 
 
 0.590
BT_2103
Transcriptional regulator.
 
  
 0.579
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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