Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_4401Hypothetical protein. (85 aa)    
Predicted Functional Partners:
BT_4406
Putative secreted endoglycosidase.
     
 0.589
BT_4407
Concanavalin A-like lectin/glucanase.
     
 0.588
BT_4402
RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.520
BT_2561
Putative anti-sigma factor; FrrF homolog.
   
  
 0.472
BT_4403
Putative anti-sigma factor; FrrF homolog.
  
    0.459
BT_0280
Transposase for insertion sequence element ISRM3; Required for the transposition of the insertion element.
   
  
 0.437
BT_3967
Putative two-component system sensor protein histidine kinase.
   
  
 0.434
BT_4293
Conserved hypothetical protein.
      
 0.409
BT_0158
Na(+)/H(+) antiporter.
      
 0.408
BT_0161
Putative permease.
      
 0.408
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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