Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BT_4780Conserved protein found in conjugate transposon; TraN homolog. (299 aa)    
Predicted Functional Partners:
BT_4779
Conserved protein found in conjugate transposon; TraM homolog, fragment.
 
   
 0.949
BT_4776
Conserved protein found in conjugate transposon; TraK homolog, fragment.
 
   
 0.944
BT_4778
Conserved protein found in conjugate transposon; TraM homolog, fragment.
 
   
 0.941
BT_4774
Conserved protein found in conjugate transposon; TraJ homolog.
 
   
 0.885
BT_4773
Conserved protein found in conjugate transposon; TraI homolog, fragment.
 
     0.872
BT_4770
Conserved protein found in conjugate transposon; TraG homolog, fragment.
 
   
 0.824
BT_4768
Conserved protein found in conjugate transposon; TraF homolog.
 
     0.823
BT_4767
Conserved protein found in conjugate transposon; TraE homolog.
 
     0.820
BT_4769
Conserved protein found in conjugate transposon; TraG homolog, fragment.
 
   
 0.815
BT_4762
Conserved protein found in conjugate transposon; TraA homolog, fragment.
 
     0.793
Your Current Organism:
Bacteroides thetaiotaomicron
NCBI taxonomy Id: 226186
Other names: B. thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron VPI-5482, Bacteroides thetaiotaomicron str. VPI-5482, Bacteroides thetaiotaomicron strain VPI-5482
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