STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIN78789.1Bacteroides conjugative transposon TraN protein. (279 aa)    
Predicted Functional Partners:
SIN78768.1
Bacteroides conjugative transposon TraK protein.
 
   
 0.928
SIN78780.1
Bacteroides conjugative transposon TraM protein.
 
   
 0.926
SIN78760.1
Bacteroides conjugative transposon TraJ protein.
 
   
 0.924
SIN78721.1
Bacteroides conjugation system ATPase, TraG family.
 
   
 0.911
SIN78751.1
Hypothetical protein.
 
     0.910
SIN78732.1
Hypothetical protein.
 
     0.905
SIN78741.1
Hypothetical protein.
 
     0.904
SIN78798.1
Hypothetical protein.
 
     0.904
SIN78708.1
Protein of unknown function; Manually curated.
 
     0.887
SIN78698.1
Protein of unknown function.
 
     0.874
Your Current Organism:
Algoriphagus halophilus
NCBI taxonomy Id: 226505
Other names: A. halophilus, Algoriphagus halophilus (Yi and Chun 2004) Nedashkovskaya et al. 2004, DSM 15292, Flexibacteraceae bacterium IMSNU 14013, Hongiella halophila, Hongiella halophila Yi and Chun 2004, IMSNU 14013, KCTC 12051, strain JC 2051
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.