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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO06308.1Beta-carotene 3-hydroxylase. (148 aa)    
Predicted Functional Partners:
SIO06373.1
Phytoene/squalene synthetase.
 
 0.956
SIO06417.1
Beta-carotene ketolase (CrtW type).
 
 
 0.903
SIO06353.1
Phytoene desaturase.
 
   
 0.853
SIO06323.1
DNA-binding transcriptional regulator, MerR family.
 
     0.833
SIO06291.1
Putative membrane protein.
 
     0.707
kmo
Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.
   
 0.688
SIO06391.1
Lycopene cyclase domain-containing protein.
 
     0.680
SIN98794.1
Phytoene desaturase.
 
   
 0.656
SIN82116.1
Protein of unknown function.
   
 0.602
SIN97300.1
Hypothetical protein; Belongs to the cytochrome P450 family.
   
 0.574
Your Current Organism:
Algoriphagus halophilus
NCBI taxonomy Id: 226505
Other names: A. halophilus, Algoriphagus halophilus (Yi and Chun 2004) Nedashkovskaya et al. 2004, DSM 15292, Flexibacteraceae bacterium IMSNU 14013, Hongiella halophila, Hongiella halophila Yi and Chun 2004, IMSNU 14013, KCTC 12051, strain JC 2051
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