STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO12699.1Hypothetical protein. (194 aa)    
Predicted Functional Partners:
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
    
  0.811
SIN71687.1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
  0.801
guaB
IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
  0.787
SIO12686.1
Hypothetical protein.
       0.782
SIO12712.1
ATP-binding cassette, subfamily B.
       0.677
truA-2
tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
    0.673
SIO12663.1
Hypothetical protein.
       0.574
SIO12677.1
Hypothetical protein.
       0.574
SIO12740.1
Protein of unknown function.
       0.476
Your Current Organism:
Algoriphagus halophilus
NCBI taxonomy Id: 226505
Other names: A. halophilus, Algoriphagus halophilus (Yi and Chun 2004) Nedashkovskaya et al. 2004, DSM 15292, Flexibacteraceae bacterium IMSNU 14013, Hongiella halophila, Hongiella halophila Yi and Chun 2004, IMSNU 14013, KCTC 12051, strain JC 2051
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