STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO15129.1Starch-binding associating with outer membrane. (503 aa)    
Predicted Functional Partners:
SIO15119.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.943
SIN80679.1
Starch-binding associating with outer membrane.
  
 
   0.771
SIO15160.1
Protein of unknown function.
 
     0.766
SIN77785.1
Outer membrane receptor proteins, mostly Fe transport.
  
 
   0.742
SIN65980.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.733
SIO15191.1
Galactose mutarotase.
 
     0.730
SIN80668.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.723
SIO14145.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.715
SIO15148.1
Putative heme-binding domain-containing protein.
 
     0.709
SIO04636.1
TonB-linked outer membrane protein, SusC/RagA family; Manually curated.
  
 
   0.692
Your Current Organism:
Algoriphagus halophilus
NCBI taxonomy Id: 226505
Other names: A. halophilus, Algoriphagus halophilus (Yi and Chun 2004) Nedashkovskaya et al. 2004, DSM 15292, Flexibacteraceae bacterium IMSNU 14013, Hongiella halophila, Hongiella halophila Yi and Chun 2004, IMSNU 14013, KCTC 12051, strain JC 2051
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