STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN61520.1Vitamin K-dependent gamma-carboxylase. (445 aa)    
Predicted Functional Partners:
SFN61551.1
Hypothetical protein.
 
     0.950
SFN61579.1
Protein of unknown function.
 
     0.945
SFN61490.1
Fe(3+) dicitrate transport protein.
 
     0.942
SFO74123.1
Predicted dehydrogenase.
    
 0.607
SFN61599.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
    0.557
SFN65789.1
Fe(3+) dicitrate transport protein.
 
     0.529
SFN61458.1
HopJ type III effector protein.
       0.506
SFO63654.1
Hypothetical protein.
  
     0.462
SFN61630.1
Putative membrane-bound dehydrogenase domain-containing protein.
       0.448
SFN88544.1
Kef-type potassium/proton antiporter accessory protein, CPA2 family.
    
  0.417
Your Current Organism:
Algoriphagus ornithinivorans
NCBI taxonomy Id: 226506
Other names: A. ornithinivorans, Algoriphagus ornithinivorans (Yi and Chun 2004) Nedashkovskaya et al. 2007, DSM 15282, Flexibacteraceae bacterium IMSNU 14014, Hongiella ornithinivorans, Hongiella ornithinivorans Yi and Chun 2004, IMSNU 14014, KCTC 12052, strain JC2052
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