STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN89268.12,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family. (271 aa)    
Predicted Functional Partners:
SFO77569.1
Dihydrodipicolinate reductase; Belongs to the DapB family.
 
 
 0.958
SFN91492.1
Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.821
SFN81184.1
Aspartate/methionine/tyrosine aminotransferase.
    
 0.818
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
   
  
 0.790
SFN89305.1
TPR repeat-containing protein.
       0.766
SFN89236.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.601
SFN78940.1
Acetylornithine/succinyldiaminopimelate/putresci ne aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.581
SFO72443.1
Aspartate kinase.
 
  
 0.539
dapA
4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
 
  
 0.508
SFO43639.1
Acyl-protein synthetase, LuxE.
  
     0.498
Your Current Organism:
Algoriphagus ornithinivorans
NCBI taxonomy Id: 226506
Other names: A. ornithinivorans, Algoriphagus ornithinivorans (Yi and Chun 2004) Nedashkovskaya et al. 2007, DSM 15282, Flexibacteraceae bacterium IMSNU 14014, Hongiella ornithinivorans, Hongiella ornithinivorans Yi and Chun 2004, IMSNU 14014, KCTC 12052, strain JC2052
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