STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO38187.12-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase. (220 aa)    
Predicted Functional Partners:
SFO38210.1
2-dehydro-3-deoxygluconokinase.
 
 
 0.995
SFO68638.1
FAD/FMN-containing dehydrogenase.
   
 
 0.880
SFO22488.1
2-oxoisovalerate dehydrogenase E1 component.
     
 0.856
SFO43676.1
Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component.
     
 0.856
SFO41201.1
Glyoxylate/hydroxypyruvate reductase A.
    
  0.807
uxaC
D-glucuronate isomerase.
 
   
 0.769
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
  
  
 0.769
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
   
 0.723
SFO55997.1
Tagaturonate reductase.
 
  
 0.698
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.649
Your Current Organism:
Algoriphagus ornithinivorans
NCBI taxonomy Id: 226506
Other names: A. ornithinivorans, Algoriphagus ornithinivorans (Yi and Chun 2004) Nedashkovskaya et al. 2007, DSM 15282, Flexibacteraceae bacterium IMSNU 14014, Hongiella ornithinivorans, Hongiella ornithinivorans Yi and Chun 2004, IMSNU 14014, KCTC 12052, strain JC2052
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