STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO46783.1Iron-sulfur cluster assembly protein; Belongs to the HesB/IscA family. (108 aa)    
Predicted Functional Partners:
SFN99542.1
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain.
 
 
 0.601
SFN90664.1
Cysteine desulfurase IscS.
 
  
 0.585
SFO28534.1
Cysteine desulfurase.
 
  
 0.574
SFO49516.1
Iron-regulated ABC transporter ATPase subunit SufC.
  
 
 0.536
SFO74842.1
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain.
  
 
 0.535
SFO49499.1
Iron-regulated ABC transporter membrane component SufB.
  
 
 0.534
SFO49533.1
Iron-regulated ABC transporter permease protein SufD.
  
 
 0.534
SFO46763.1
methylmalonyl-CoA epimerase.
  
    0.530
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
  
     0.508
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
       0.500
Your Current Organism:
Algoriphagus ornithinivorans
NCBI taxonomy Id: 226506
Other names: A. ornithinivorans, Algoriphagus ornithinivorans (Yi and Chun 2004) Nedashkovskaya et al. 2007, DSM 15282, Flexibacteraceae bacterium IMSNU 14014, Hongiella ornithinivorans, Hongiella ornithinivorans Yi and Chun 2004, IMSNU 14014, KCTC 12052, strain JC2052
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