STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO48692.1Protein involved in gliding motility RemC. (344 aa)    
Predicted Functional Partners:
SFO48719.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.901
SFO48677.1
Asparagine synthase (glutamine-hydrolysing).
 
     0.861
SFO48760.1
Hypothetical protein.
 
    0.854
SFO48746.1
AMP-binding enzyme.
 
     0.831
SFO48705.1
Nucleoside-diphosphate-sugar epimerase.
  
 
  0.801
SFO48732.1
Hypothetical protein.
       0.773
SFO48823.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.767
SFO48796.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.762
SFO48871.1
Glycosyl transferases group 1.
 
     0.665
SFO02621.1
Trehalose 6-phosphate synthase/phosphatase.
  
 0.612
Your Current Organism:
Algoriphagus ornithinivorans
NCBI taxonomy Id: 226506
Other names: A. ornithinivorans, Algoriphagus ornithinivorans (Yi and Chun 2004) Nedashkovskaya et al. 2007, DSM 15282, Flexibacteraceae bacterium IMSNU 14014, Hongiella ornithinivorans, Hongiella ornithinivorans Yi and Chun 2004, IMSNU 14014, KCTC 12052, strain JC2052
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