STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_002754Small ubiquitin-related modifier. (99 aa)    
Predicted Functional Partners:
CRG98_046234
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.964
CRG98_009863
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.964
CRG98_020108
SUMO-activating enzyme subunit; Belongs to the ubiquitin-activating E1 family.
   
 0.912
CRG98_020107
Uncharacterized protein.
   
 0.912
CRG98_036246
ThiF domain-containing protein.
   
 0.906
CRG98_019112
Uncharacterized protein.
   
 0.906
CRG98_019113
ThiF domain-containing protein.
   
 0.906
CRG98_019039
WPP domain-containing protein.
    
 0.894
CRG98_042119
WPP domain-containing protein.
    
 0.894
CRG98_014564
ULP_PROTEASE domain-containing protein.
   
 0.892
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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