Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_020610HTH La-type RNA-binding domain-containing protein. (934 aa)    
Predicted Functional Partners:
CRG98_005526
PWWP domain-containing protein.
     
  0.833
CRG98_047138
Uncharacterized protein.
     
  0.778
CRG98_009251
Peptidase_M1 domain-containing protein.
     
  0.778
CRG98_008399
Ribonuclease; Cytoprotective ribonuclease (RNase) required for resistance to abiotic stresses, acting as a positive regulator of mRNA decapping during stress.
    
 0.776
CRG98_000277
USP domain-containing protein; Belongs to the peptidase C19 family.
     
  0.773
CRG98_003555
Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.
   
 
 0.765
CRG98_000625
Helicase ATP-binding domain-containing protein.
   
 
 0.764
CRG98_000624
Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.
   
 
 0.764
CRG98_023701
Homeobox domain-containing protein.
      
 0.740
CRG98_035001
Xpo1 domain-containing protein.
   
  
 0.738
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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