Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CRG98_000418 | CRG98_003019 | A0A218WFA3 | A0A218WK27 | Uncharacterized protein. | Small nuclear ribonucleoprotein-associated protein. | 0.652 |
CRG98_000418 | CRG98_009832 | A0A218WFA3 | A0A218XI72 | Uncharacterized protein. | RRM domain-containing protein. | 0.663 |
CRG98_000418 | CRG98_011079 | A0A218WFA3 | A0A2I0KJN7 | Uncharacterized protein. | U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. | 0.647 |
CRG98_000418 | CRG98_023808 | A0A218WFA3 | A0A2I0JHS5 | Uncharacterized protein. | Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. | 0.669 |
CRG98_000418 | CRG98_025080 | A0A218WFA3 | A0A2I0JFZ1 | Uncharacterized protein. | RRM domain-containing protein. | 0.626 |
CRG98_000418 | CRG98_026238 | A0A218WFA3 | A0A2I0JAS9 | Uncharacterized protein. | RRM domain-containing protein. | 0.634 |
CRG98_000418 | CRG98_028930 | A0A218WFA3 | A0A2I0J3R1 | Uncharacterized protein. | Sm domain-containing protein. | 0.674 |
CRG98_000418 | CRG98_032948 | A0A218WFA3 | A0A218XQL4 | Uncharacterized protein. | Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. | 0.715 |
CRG98_000418 | CRG98_033828 | A0A218WFA3 | A0A2I0IP89 | Uncharacterized protein. | Nuclear cap-binding protein subunit 2. | 0.688 |
CRG98_000418 | CRG98_039129 | A0A218WFA3 | A0A2I0I9L4 | Uncharacterized protein. | Ubiquitin-like domain-containing protein. | 0.651 |
CRG98_003019 | CRG98_000418 | A0A218WK27 | A0A218WFA3 | Small nuclear ribonucleoprotein-associated protein. | Uncharacterized protein. | 0.652 |
CRG98_003019 | CRG98_009832 | A0A218WK27 | A0A218XI72 | Small nuclear ribonucleoprotein-associated protein. | RRM domain-containing protein. | 0.895 |
CRG98_003019 | CRG98_011079 | A0A218WK27 | A0A2I0KJN7 | Small nuclear ribonucleoprotein-associated protein. | U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. | 0.995 |
CRG98_003019 | CRG98_023808 | A0A218WK27 | A0A2I0JHS5 | Small nuclear ribonucleoprotein-associated protein. | Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. | 0.999 |
CRG98_003019 | CRG98_026238 | A0A218WK27 | A0A2I0JAS9 | Small nuclear ribonucleoprotein-associated protein. | RRM domain-containing protein. | 0.530 |
CRG98_003019 | CRG98_028930 | A0A218WK27 | A0A2I0J3R1 | Small nuclear ribonucleoprotein-associated protein. | Sm domain-containing protein. | 0.999 |
CRG98_003019 | CRG98_033828 | A0A218WK27 | A0A2I0IP89 | Small nuclear ribonucleoprotein-associated protein. | Nuclear cap-binding protein subunit 2. | 0.996 |
CRG98_003019 | CRG98_039129 | A0A218WK27 | A0A2I0I9L4 | Small nuclear ribonucleoprotein-associated protein. | Ubiquitin-like domain-containing protein. | 0.885 |
CRG98_009832 | CRG98_000418 | A0A218XI72 | A0A218WFA3 | RRM domain-containing protein. | Uncharacterized protein. | 0.663 |
CRG98_009832 | CRG98_003019 | A0A218XI72 | A0A218WK27 | RRM domain-containing protein. | Small nuclear ribonucleoprotein-associated protein. | 0.895 |
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