CRG98_004499 protein (Punica granatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CRG98_004499

HTH La-type RNA-binding domain-containing protein. (539 aa)

Predicted Functional Partners:

CRG98_035120

0.644

CRG98_035121

0.644

CRG98_004251

0.519

CRG98_013048

0.489

CRG98_022243

0.457

CRG98_045609

0.453

CRG98_045610

0.453

CRG98_045608

0.453

CRG98_042160

0.453

CRG98_042161

0.453

Your Current Organism:

Punica granatum

NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRG98_004251	CRG98_004499	A0A2I0L3V1	A0A218WSL3	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	HTH La-type RNA-binding domain-containing protein.	0.519
CRG98_004251	CRG98_013048	A0A2I0L3V1	A0A2I0KDG6	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.469
CRG98_004251	CRG98_022243	A0A2I0L3V1	A0A218XLK7	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.997
CRG98_004251	CRG98_035120	A0A2I0L3V1	A0A2I0IKF0	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	OB_NTP_bind domain-containing protein.	0.935
CRG98_004251	CRG98_035121	A0A2I0L3V1	A0A2I0IMA3	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.935
CRG98_004499	CRG98_004251	A0A218WSL3	A0A2I0L3V1	HTH La-type RNA-binding domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.519
CRG98_004499	CRG98_013048	A0A218WSL3	A0A2I0KDG6	HTH La-type RNA-binding domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.489
CRG98_004499	CRG98_022243	A0A218WSL3	A0A218XLK7	HTH La-type RNA-binding domain-containing protein.	Uncharacterized protein.	0.457
CRG98_004499	CRG98_035120	A0A218WSL3	A0A2I0IKF0	HTH La-type RNA-binding domain-containing protein.	OB_NTP_bind domain-containing protein.	0.644
CRG98_004499	CRG98_035121	A0A218WSL3	A0A2I0IMA3	HTH La-type RNA-binding domain-containing protein.	Uncharacterized protein.	0.644
CRG98_004499	CRG98_042160	A0A218WSL3	A0A2I0I0F9	HTH La-type RNA-binding domain-containing protein.	MIF4G domain-containing protein.	0.453
CRG98_004499	CRG98_042161	A0A218WSL3	A0A2I0I1U2	HTH La-type RNA-binding domain-containing protein.	Uncharacterized protein.	0.453
CRG98_004499	CRG98_045608	A0A218WSL3	A0A2I0HRB0	HTH La-type RNA-binding domain-containing protein.	Uncharacterized protein.	0.453
CRG98_004499	CRG98_045609	A0A218WSL3	A0A2I0HQJ5	HTH La-type RNA-binding domain-containing protein.	MIF4G domain-containing protein.	0.453
CRG98_004499	CRG98_045610	A0A218WSL3	A0A2I0HQK4	HTH La-type RNA-binding domain-containing protein.	MI domain-containing protein.	0.453
CRG98_013048	CRG98_004251	A0A2I0KDG6	A0A2I0L3V1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.469
CRG98_013048	CRG98_004499	A0A2I0KDG6	A0A218WSL3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	HTH La-type RNA-binding domain-containing protein.	0.489
CRG98_013048	CRG98_022243	A0A2I0KDG6	A0A218XLK7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.532
CRG98_013048	CRG98_035120	A0A2I0KDG6	A0A2I0IKF0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	OB_NTP_bind domain-containing protein.	0.806
CRG98_013048	CRG98_035121	A0A2I0KDG6	A0A2I0IMA3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.806