Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_015180Usp domain-containing protein. (237 aa)    
Predicted Functional Partners:
CRG98_004297
Uncharacterized protein.
  
     0.503
CRG98_027516
Uncharacterized protein.
  
     0.480
CRG98_039145
Uncharacterized protein.
  
     0.474
CRG98_022724
Uncharacterized protein.
  
     0.474
CRG98_033123
Uncharacterized protein.
  
     0.466
CRG98_033117
Uncharacterized protein.
  
     0.463
CRG98_015411
SAM domain-containing protein.
  
     0.459
CRG98_043994
SAM domain-containing protein.
  
     0.457
CRG98_007244
Uncharacterized protein.
   
  
 0.441
CRG98_007243
DUF547 domain-containing protein.
   
  
 0.441
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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