STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_032251Uncharacterized protein. (180 aa)    
Predicted Functional Partners:
CRG98_030305
Uncharacterized protein.
  
     0.535
CRG98_013427
Uncharacterized protein.
  
     0.534
CRG98_043019
Expansin-like EG45 domain-containing protein.
  
     0.532
CRG98_030307
Lipase_3 domain-containing protein.
  
     0.532
CRG98_037993
Uncharacterized protein.
  
     0.528
CRG98_050262
Uncharacterized protein.
  
     0.526
CRG98_049379
Uncharacterized protein.
  
     0.526
CRG98_036691
Uncharacterized protein.
  
     0.526
CRG98_013387
Uncharacterized protein.
  
     0.526
CRG98_019729
GH16 domain-containing protein.
  
     0.525
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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