STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_019046Uncharacterized protein. (925 aa)    
Predicted Functional Partners:
CRG98_038024
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family.
     
 0.964
CRG98_020455
Uncharacterized protein.
     
 0.924
CRG98_014798
Uncharacterized protein.
     
 0.913
CRG98_033612
Autophagy protein 5; Required for autophagy.
     
 0.882
CRG98_033611
Autophagy protein 5; Required for autophagy.
     
 0.882
CRG98_028111
Uncharacterized protein.
   
 0.874
CRG98_028109
Miro domain-containing protein.
   
 0.874
CRG98_028110
EF-hand domain-containing protein.
   
 0.874
CRG98_036960
Uncharacterized protein.
     
 0.835
CRG98_036959
Uncharacterized protein.
     
 0.835
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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