STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_026565Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (228 aa)    
Predicted Functional Partners:
CRG98_024425
Uncharacterized protein.
   
  
 0.999
CRG98_042259
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
   
 
 0.999
CRG98_045988
Uncharacterized protein.
   
 
 0.999
CRG98_031142
WD_REPEATS_REGION domain-containing protein.
   
  
 0.999
CRG98_047358
RNA_pol_L_2 domain-containing protein.
  
    0.999
CRG98_044833
Uncharacterized protein.
   
 
 0.999
CRG98_043620
Brix domain-containing protein.
   
 
 0.999
CRG98_041543
Nop domain-containing protein.
   
 
 0.999
CRG98_035750
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
  
 0.999
CRG98_030728
Brix domain-containing protein.
   
 
 0.999
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.