STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_046966Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (325 aa)    
Predicted Functional Partners:
CRG98_021985
Threonine dehydratase.
  
 
 0.916
CRG98_024595
Uncharacterized protein.
  
 
 0.900
CRG98_006237
Homoserine dehydrogenase.
  
 
 0.900
CRG98_007504
Uncharacterized protein.
  
 0.895
CRG98_007502
Uncharacterized protein.
  
 0.895
CRG98_007503
Uncharacterized protein.
  
 0.895
CRG98_026314
Uncharacterized protein; Belongs to the TPP enzyme family.
  
 0.884
CRG98_046842
Pyruvate carboxyltransferase domain-containing protein.
  
 0.881
CRG98_031527
Pyruvate carboxyltransferase domain-containing protein; Belongs to the alpha-IPM synthase/homocitrate synthase family.
  
 0.881
CRG98_018254
Transket_pyr domain-containing protein.
  
 0.879
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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