STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_045444DNA_pol_B_exo1 domain-containing protein. (532 aa)    
Predicted Functional Partners:
CRG98_036683
Uncharacterized protein.
   
 0.991
CRG98_014899
DNA helicase; Belongs to the MCM family.
   
 0.979
CRG98_005219
DNA helicase; Belongs to the MCM family.
   
 0.966
CRG98_034299
DNA primase; Belongs to the eukaryotic-type primase small subunit family.
   
 0.961
CRG98_001287
DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.
   
 0.961
CRG98_020099
DNA helicase; Belongs to the MCM family.
   
 0.951
CRG98_002485
Uncharacterized protein.
   
 0.939
CRG98_002484
Uncharacterized protein.
   
 0.939
CRG98_039073
CBFD_NFYB_HMF domain-containing protein.
   
 0.933
CRG98_002746
Uncharacterized protein.
   
 0.927
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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