STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_045145AAI domain-containing protein. (209 aa)    
Predicted Functional Partners:
CRG98_024027
HMG box domain-containing protein.
  
  0.686
CRG98_029206
QLQ domain-containing protein.
   
  0.641
CRG98_015440
Helicase ATP-binding domain-containing protein.
   
  0.641
CRG98_015442
SnAC domain-containing protein.
   
  0.641
CRG98_015441
Uncharacterized protein.
   
  0.641
CRG98_021013
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.626
CRG98_003028
Phytocyanin domain-containing protein.
    
 0.603
CRG98_003095
Uncharacterized protein.
  
 
  0.602
CRG98_031011
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
  
 
  0.597
CRG98_047553
Uncharacterized protein.
  
 
  0.597
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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