STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_045569PABS domain-containing protein. (260 aa)    
Predicted Functional Partners:
CRG98_009196
Uncharacterized protein.
  
 
 0.816
CRG98_009195
Uncharacterized protein; Belongs to the arginase family.
  
 
 0.816
CRG98_031648
S-adenosylmethionine decarboxylase proenzyme.
  
 
 0.777
CRG98_020132
Orn_DAP_Arg_deC domain-containing protein.
  
 0.770
CRG98_020131
Uncharacterized protein.
  
 0.770
CRG98_032866
N-acetyltransferase domain-containing protein.
     
 0.766
CRG98_036388
Uncharacterized protein.
    
 0.753
CRG98_017764
Amino_oxidase domain-containing protein.
     
 0.716
CRG98_035754
Uncharacterized protein.
    
 0.710
CRG98_043606
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.
  
 
 0.702
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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