CRG98_044082 protein (Punica granatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CRG98_044082

Uncharacterized protein. (63 aa)

Predicted Functional Partners:

CRG98_031665

0.881

CRG98_016310

0.878

CRG98_007885

0.878

CRG98_029375

0.833

CRG98_029374

0.833

CRG98_002508

0.783

CRG98_001259

0.783

CRG98_047939

0.758

CRG98_030536

0.758

CRG98_018831

0.754

Your Current Organism:

Punica granatum

NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRG98_001259	CRG98_007885	A0A2I0LDK6	A0A2I0KTF0	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Nascent polypeptide-associated complex subunit beta.	0.950
CRG98_001259	CRG98_016310	A0A2I0LDK6	A0A218VS13	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Nascent polypeptide-associated complex subunit beta.	0.950
CRG98_001259	CRG98_018831	A0A2I0LDK6	A0A218VXQ5	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.997
CRG98_001259	CRG98_029374	A0A2I0LDK6	A0A2I0J244	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein; Belongs to the GST superfamily.	0.999
CRG98_001259	CRG98_029375	A0A2I0LDK6	A0A2I0J235	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	EF-1-gamma C-terminal domain-containing protein.	0.999
CRG98_001259	CRG98_030536	A0A2I0LDK6	A0A2I0IYK9	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.998
CRG98_001259	CRG98_031665	A0A2I0LDK6	A0A218VWD8	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribos_L4_asso_C domain-containing protein.	0.999
CRG98_001259	CRG98_044082	A0A2I0LDK6	A0A2I0HVB1	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.783
CRG98_001259	CRG98_047939	A0A2I0LDK6	A0A218X1Y2	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.998
CRG98_002508	CRG98_007885	A0A2I0L8I2	A0A2I0KTF0	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Nascent polypeptide-associated complex subunit beta.	0.950
CRG98_002508	CRG98_016310	A0A2I0L8I2	A0A218VS13	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Nascent polypeptide-associated complex subunit beta.	0.950
CRG98_002508	CRG98_018831	A0A2I0L8I2	A0A218VXQ5	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.997
CRG98_002508	CRG98_029374	A0A2I0L8I2	A0A2I0J244	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein; Belongs to the GST superfamily.	0.999
CRG98_002508	CRG98_029375	A0A2I0L8I2	A0A2I0J235	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	EF-1-gamma C-terminal domain-containing protein.	0.999
CRG98_002508	CRG98_030536	A0A2I0L8I2	A0A2I0IYK9	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.998
CRG98_002508	CRG98_031665	A0A2I0L8I2	A0A218VWD8	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribos_L4_asso_C domain-containing protein.	0.999
CRG98_002508	CRG98_044082	A0A2I0L8I2	A0A2I0HVB1	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.783
CRG98_002508	CRG98_047939	A0A2I0L8I2	A0A218X1Y2	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.998
CRG98_007885	CRG98_001259	A0A2I0KTF0	A0A2I0LDK6	Nascent polypeptide-associated complex subunit beta.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.950
CRG98_007885	CRG98_002508	A0A2I0KTF0	A0A2I0L8I2	Nascent polypeptide-associated complex subunit beta.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.950