STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_040178Uncharacterized protein. (451 aa)    
Predicted Functional Partners:
CRG98_032834
Uncharacterized protein.
      
 0.581
CRG98_012878
Uncharacterized protein.
      
 0.579
CRG98_011223
Protein-lysine N-methyltransferase CRG98_011223; S-adenosyl-L-methionine-dependent protein-lysine N- methyltransferase that methylates elongation factor 1-alpha. Belongs to the class I-like SAM-binding methyltransferase superfamily. EFM4 family.
      
 0.522
CRG98_018053
Uncharacterized protein.
      
 0.518
CRG98_030417
Uncharacterized protein.
  
     0.512
CRG98_010765
ANK_REP_REGION domain-containing protein.
    
  0.420
CRG98_010766
Uncharacterized protein.
    
  0.420
CRG98_018560
Uncharacterized protein.
      
 0.408
CRG98_024932
Uncharacterized protein.
      
 0.408
CRG98_006639
RING-type E3 ubiquitin transferase.
      
 0.408
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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