STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_039792HABP4_PAI-RBP1 domain-containing protein. (259 aa)    
Predicted Functional Partners:
CRG98_031665
Ribos_L4_asso_C domain-containing protein.
   
 
 0.959
CRG98_001769
WD_REPEATS_REGION domain-containing protein.
   
 
 0.956
CRG98_016771
Methyltrans_SAM domain-containing protein.
   
 
 0.956
CRG98_002862
Ubiquitin-like domain-containing protein.
   
 
 0.946
CRG98_047939
Uncharacterized protein.
   
 
 0.942
CRG98_030536
Uncharacterized protein.
   
 
 0.942
CRG98_027692
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
   0.932
CRG98_047332
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
   
   0.932
CRG98_040058
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
   
   0.932
CRG98_002508
Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.
   
   0.932
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.