STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_039488Plus3 domain-containing protein. (692 aa)    
Predicted Functional Partners:
CRG98_001564
Uncharacterized protein.
   
 0.982
CRG98_001563
Uncharacterized protein.
   
 0.982
CRG98_021344
Uncharacterized protein.
   
 0.981
CRG98_021343
Uncharacterized protein.
   
 0.981
CRG98_040105
CDC73_N domain-containing protein.
   
 0.979
CRG98_028556
CDC73_N domain-containing protein.
   
 0.979
CRG98_028557
CDC73_N domain-containing protein.
   
 0.979
CRG98_020268
Uncharacterized protein.
   
 0.978
CRG98_045158
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]
   
 0.973
CRG98_045157
POB3_N domain-containing protein.
   
 0.973
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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