CRG98_038799 protein (Punica granatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CRG98_038799

Uncharacterized protein. (267 aa)

Predicted Functional Partners:

CRG98_019791

0.619

CRG98_036113

0.597

CRG98_036348

0.596

CRG98_034642

0.586

CRG98_011327

0.564

CRG98_011328

0.564

CRG98_020455

0.556

CRG98_010765

0.556

CRG98_010766

0.556

CRG98_045534

0.552

Your Current Organism:

Punica granatum

NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRG98_010765	CRG98_010766	A0A2I0KJN9	A0A2I0KJS6	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.668
CRG98_010765	CRG98_011327	A0A2I0KJN9	A0A2I0KIF4	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.905
CRG98_010765	CRG98_011328	A0A2I0KJN9	A0A2I0KIH7	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.905
CRG98_010765	CRG98_020455	A0A2I0KJN9	A0A2I0JS07	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.934
CRG98_010765	CRG98_034642	A0A2I0KJN9	A0A2I0ILS5	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.583
CRG98_010765	CRG98_038799	A0A2I0KJN9	A0A2I0I9V6	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.556
CRG98_010766	CRG98_010765	A0A2I0KJS6	A0A2I0KJN9	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.668
CRG98_010766	CRG98_011327	A0A2I0KJS6	A0A2I0KIF4	Uncharacterized protein.	Uncharacterized protein.	0.905
CRG98_010766	CRG98_011328	A0A2I0KJS6	A0A2I0KIH7	Uncharacterized protein.	Uncharacterized protein.	0.905
CRG98_010766	CRG98_020455	A0A2I0KJS6	A0A2I0JS07	Uncharacterized protein.	Uncharacterized protein.	0.934
CRG98_010766	CRG98_034642	A0A2I0KJS6	A0A2I0ILS5	Uncharacterized protein.	Uncharacterized protein.	0.583
CRG98_010766	CRG98_038799	A0A2I0KJS6	A0A2I0I9V6	Uncharacterized protein.	Uncharacterized protein.	0.556
CRG98_011327	CRG98_010765	A0A2I0KIF4	A0A2I0KJN9	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.905
CRG98_011327	CRG98_010766	A0A2I0KIF4	A0A2I0KJS6	Uncharacterized protein.	Uncharacterized protein.	0.905
CRG98_011327	CRG98_034642	A0A2I0KIF4	A0A2I0ILS5	Uncharacterized protein.	Uncharacterized protein.	0.404
CRG98_011327	CRG98_036348	A0A2I0KIF4	A0A218WCB2	Uncharacterized protein.	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	0.451
CRG98_011327	CRG98_038799	A0A2I0KIF4	A0A2I0I9V6	Uncharacterized protein.	Uncharacterized protein.	0.564
CRG98_011328	CRG98_010765	A0A2I0KIH7	A0A2I0KJN9	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.905
CRG98_011328	CRG98_010766	A0A2I0KIH7	A0A2I0KJS6	Uncharacterized protein.	Uncharacterized protein.	0.905
CRG98_011328	CRG98_034642	A0A2I0KIH7	A0A2I0ILS5	Uncharacterized protein.	Uncharacterized protein.	0.404