STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_038009C2H2-type domain-containing protein. (1246 aa)    
Predicted Functional Partners:
CRG98_011861
WD_REPEATS_REGION domain-containing protein.
    
 0.968
CRG98_011862
WD_REPEATS_REGION domain-containing protein.
    
 0.968
CRG98_032864
Uncharacterized protein.
   
 0.961
CRG98_032865
Uncharacterized protein.
   
 0.959
CRG98_002862
Ubiquitin-like domain-containing protein.
    
 0.951
CRG98_030280
Ubiquitin-like domain-containing protein.
    
 0.950
CRG98_026678
WD_REPEATS_REGION domain-containing protein.
    
 0.950
CRG98_016114
WD_REPEATS_REGION domain-containing protein.
    
 0.950
CRG98_050286
Ubiquitin-like domain-containing protein.
    
 0.950
CRG98_035644
WD_REPEATS_REGION domain-containing protein.
    
 0.950
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.