STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_036439FCP1 homology domain-containing protein. (375 aa)    
Predicted Functional Partners:
CRG98_031011
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.928
CRG98_028961
LNS2 domain-containing protein.
    
 0.799
CRG98_028962
Uncharacterized protein.
    
 0.799
CRG98_017530
Uncharacterized protein.
    
 0.799
CRG98_017529
LNS2 domain-containing protein.
    
 0.799
CRG98_009903
LNS2 domain-containing protein.
    
 0.799
CRG98_040693
Uncharacterized protein.
    
 0.796
CRG98_035619
Uncharacterized protein.
    
 0.774
CRG98_021220
Uncharacterized protein.
    
 0.774
CRG98_004333
RPOLD domain-containing protein.
    
 0.764
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.