STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_034971N2227 domain-containing protein. (132 aa)    
Predicted Functional Partners:
CRG98_044176
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
   
  0.853
CRG98_022427
Uncharacterized protein.
     
 0.847
CRG98_022426
M20_dimer domain-containing protein.
     
 0.847
NBP35
Cytosolic Fe-S cluster assembly factor NBP35; Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. Functions as Fe-S scaffold, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins. Essential for embryo development.
     
 0.819
CRG98_016187
CbiA domain-containing protein.
     
 0.819
CRG98_019535
Uncharacterized protein.
     
 0.819
CRG98_012880
Uncharacterized protein.
     
 0.819
CRG98_001944
M20_dimer domain-containing protein.
     
 0.702
CRG98_013078
Uncharacterized protein.
     
 0.702
CRG98_013077
M20_dimer domain-containing protein.
     
 0.702
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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