STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_032108RBR-type E3 ubiquitin transferase. (518 aa)    
Predicted Functional Partners:
CRG98_002862
Ubiquitin-like domain-containing protein.
    
  0.637
CRG98_005895
RING-type domain-containing protein.
    
 0.627
CRG98_030280
Ubiquitin-like domain-containing protein.
    
  0.586
CRG98_050286
Ubiquitin-like domain-containing protein.
    
  0.586
CRG98_003212
Ubiquitin-like domain-containing protein.
    
  0.586
CRG98_017566
HECT domain-containing protein.
   
 
 0.568
CRG98_026690
HECT domain-containing protein.
   
 
 0.563
CRG98_006919
Uncharacterized protein.
    
 
0.523
CRG98_001695
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
  0.517
CRG98_039389
Uncharacterized protein.
    
  0.517
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.