STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_029177Pectinesterase; In the C-terminal section; belongs to the pectinesterase family. (580 aa)    
Predicted Functional Partners:
CRG98_017525
Pectate lyase.
  
 
 0.903
CRG98_000483
Uncharacterized protein.
  
  
  0.885
CRG98_001459
Uncharacterized protein.
  
  
  0.883
CRG98_047711
Uncharacterized protein.
  
  
  0.880
CRG98_016852
Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family.
  
  
 0.879
CRG98_038733
Uncharacterized protein.
  
  
  0.866
CRG98_042144
Uncharacterized protein.
  
  
  0.865
CRG98_004771
Uncharacterized protein.
  
  
  0.859
CRG98_024775
Pectate lyase.
  
 
  0.841
CRG98_044736
Pectate lyase.
  
 
  0.839
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.