STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_027633SUEL-type lectin domain-containing protein. (812 aa)    
Predicted Functional Partners:
CRG98_013046
Bgal_small_N domain-containing protein.
   
 0.762
CRG98_013047
Glyco_hydro_2_N domain-containing protein.
   
 0.762
CRG98_044397
Uncharacterized protein.
  
 
 0.728
CRG98_044396
Glyco_hydro_20 domain-containing protein.
  
 
 0.728
CRG98_035420
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
 0.685
CRG98_010613
PfkB domain-containing protein; Belongs to the carbohydrate kinase PfkB family.
     
 0.507
CRG98_044424
PfkB domain-containing protein.
     
 0.507
CRG98_049847
PfkB domain-containing protein.
     
 0.507
CRG98_047745
PfkB domain-containing protein.
     
 0.507
CRG98_043756
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
     
 0.507
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.