STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_028126Reverse transcriptase Ty1/copia-type domain-containing protein. (118 aa)    
Predicted Functional Partners:
CRG98_040532
Uncharacterized protein.
    
  0.509
CRG98_044139
Uncharacterized protein.
    
  0.509
CRG98_045340
dUTPase domain-containing protein.
    
  0.503
CRG98_009279
Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
  0.503
CRG98_007423
Reverse transcriptase Ty1/copia-type domain-containing protein.
  
     0.489
CRG98_023964
Reverse transcriptase Ty1/copia-type domain-containing protein.
  
     0.484
CRG98_036184
Reverse transcriptase Ty1/copia-type domain-containing protein.
  
     0.479
CRG98_032811
Reverse transcriptase Ty1/copia-type domain-containing protein.
  
     0.477
CRG98_004515
Reverse transcriptase Ty1/copia-type domain-containing protein.
  
     0.476
CRG98_033128
Uncharacterized protein.
    
  0.475
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.