Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CRG98_005531 | CRG98_026354 | A0A2I0L0C4 | A0A2I0JAE1 | Uncharacterized protein. | CCHC-type domain-containing protein. | 0.475 |
CRG98_009025 | CRG98_026354 | A0A218XRP8 | A0A2I0JAE1 | F-box domain-containing protein. | CCHC-type domain-containing protein. | 0.511 |
CRG98_009025 | CRG98_034004 | A0A218XRP8 | A0A2I0INV8 | F-box domain-containing protein. | Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | 0.618 |
CRG98_009279 | CRG98_026354 | A0A2I0KPG2 | A0A2I0JAE1 | Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. | CCHC-type domain-containing protein. | 0.503 |
CRG98_026354 | CRG98_005531 | A0A2I0JAE1 | A0A2I0L0C4 | CCHC-type domain-containing protein. | Uncharacterized protein. | 0.475 |
CRG98_026354 | CRG98_009025 | A0A2I0JAE1 | A0A218XRP8 | CCHC-type domain-containing protein. | F-box domain-containing protein. | 0.511 |
CRG98_026354 | CRG98_009279 | A0A2I0JAE1 | A0A2I0KPG2 | CCHC-type domain-containing protein. | Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. | 0.503 |
CRG98_026354 | CRG98_033128 | A0A2I0JAE1 | A0A2I0IR58 | CCHC-type domain-containing protein. | Uncharacterized protein. | 0.475 |
CRG98_026354 | CRG98_034004 | A0A2I0JAE1 | A0A2I0INV8 | CCHC-type domain-containing protein. | Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | 0.522 |
CRG98_026354 | CRG98_040532 | A0A2I0JAE1 | A0A218W3H4 | CCHC-type domain-containing protein. | Uncharacterized protein. | 0.509 |
CRG98_026354 | CRG98_044139 | A0A2I0JAE1 | A0A2I0HUZ9 | CCHC-type domain-containing protein. | Uncharacterized protein. | 0.509 |
CRG98_026354 | CRG98_045340 | A0A2I0JAE1 | A0A2I0HRE2 | CCHC-type domain-containing protein. | dUTPase domain-containing protein. | 0.503 |
CRG98_026354 | MED10 | A0A2I0JAE1 | A0A2I0K8B5 | CCHC-type domain-containing protein. | Mediator of RNA polymerase II transcription subunit 10; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.475 |
CRG98_026354 | MED6 | A0A2I0JAE1 | A0A218W200 | CCHC-type domain-containing protein. | Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.474 |
CRG98_033128 | CRG98_026354 | A0A2I0IR58 | A0A2I0JAE1 | Uncharacterized protein. | CCHC-type domain-containing protein. | 0.475 |
CRG98_034004 | CRG98_009025 | A0A2I0INV8 | A0A218XRP8 | Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | F-box domain-containing protein. | 0.618 |
CRG98_034004 | CRG98_026354 | A0A2I0INV8 | A0A2I0JAE1 | Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | CCHC-type domain-containing protein. | 0.522 |
CRG98_040532 | CRG98_026354 | A0A218W3H4 | A0A2I0JAE1 | Uncharacterized protein. | CCHC-type domain-containing protein. | 0.509 |
CRG98_040532 | MED6 | A0A218W3H4 | A0A218W200 | Uncharacterized protein. | Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.801 |
CRG98_044139 | CRG98_026354 | A0A2I0HUZ9 | A0A2I0JAE1 | Uncharacterized protein. | CCHC-type domain-containing protein. | 0.509 |
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