STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_024938Lipase_GDSL domain-containing protein; Belongs to the 'GDSL' lipolytic enzyme family. (369 aa)    
Predicted Functional Partners:
CRG98_027886
Glutamine-dependent NAD(+) synthetase; In the C-terminal section; belongs to the NAD synthetase family.
    
 0.734
CRG98_046022
Nicotinamide-nucleotide adenylyltransferase.
     
 0.729
CRG98_025333
Uncharacterized protein.
     
 0.592
CRG98_019551
Uncharacterized protein.
     
 0.592
CRG98_008161
Fe2OG dioxygenase domain-containing protein.
    
 0.576
CRG98_042820
Uncharacterized protein.
    
 0.576
CRG98_031673
Glyco_transf_5 domain-containing protein.
    
 0.576
CRG98_031674
Glycos_transf_1 domain-containing protein.
    
 0.576
CRG98_028949
Uncharacterized protein.
    
 0.576
CRG98_028950
Alpha-amylase; Belongs to the glycosyl hydrolase 13 family.
    
 0.576
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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