STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_024935TPR_REGION domain-containing protein. (841 aa)    
Predicted Functional Partners:
CRG98_026412
N-acetyltransferase domain-containing protein.
    
 
 0.945
CRG98_011560
Uncharacterized protein.
    
 
 0.935
CRG98_019008
Uncharacterized protein.
    
 
 0.935
CRG98_048333
Uncharacterized protein.
   
 
 0.800
CRG98_015160
Uncharacterized protein.
   
 
 0.800
CRG98_031768
Uncharacterized protein.
   
  
 0.640
CRG98_031769
TPR_REGION domain-containing protein.
   
  
 0.640
CRG98_021141
RING-type domain-containing protein.
   
    0.542
CRG98_004242
NUC173 domain-containing protein.
  
    0.529
CRG98_042005
WD_REPEATS_REGION domain-containing protein.
   
    0.511
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.