CRG98_024317 protein (Punica granatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CRG98_024317

Uncharacterized protein. (168 aa)

Predicted Functional Partners:

CRG98_009417

0.541

CRG98_028148

0.522

CRG98_050024

0.512

CRG98_006334

0.511

CRG98_045637

0.509

CRG98_034079

0.502

CRG98_011316

0.497

CRG98_028149

0.491

CRG98_049946

0.490

CRG98_009727

0.490

Your Current Organism:

Punica granatum

NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRG98_006334	CRG98_009417	A0A2I0KZU5	A0A218WQK2	NAC domain-containing protein.	FRIGIDA-like protein; Belongs to the Frigida family.	0.455
CRG98_006334	CRG98_009727	A0A2I0KZU5	A0A2I0KMY8	NAC domain-containing protein.	Malectin_like domain-containing protein.	0.412
CRG98_006334	CRG98_024317	A0A2I0KZU5	A0A2I0JGA0	NAC domain-containing protein.	Uncharacterized protein.	0.511
CRG98_006334	CRG98_028148	A0A2I0KZU5	A0A2I0J5D6	NAC domain-containing protein.	Uncharacterized protein.	0.472
CRG98_006334	CRG98_028149	A0A2I0KZU5	A0A2I0J5C4	NAC domain-containing protein.	PMR5N domain-containing protein.	0.507
CRG98_006334	CRG98_045637	A0A2I0KZU5	A0A2I0HQV6	NAC domain-containing protein.	Exostosin domain-containing protein; Belongs to the glycosyltransferase 47 family.	0.503
CRG98_006334	CRG98_049946	A0A2I0KZU5	A0A2I0H1I4	NAC domain-containing protein.	PMR5N domain-containing protein.	0.499
CRG98_006334	CRG98_050024	A0A2I0KZU5	A0A2I0GTE0	NAC domain-containing protein.	FRIGIDA-like protein; Belongs to the Frigida family.	0.450
CRG98_009417	CRG98_006334	A0A218WQK2	A0A2I0KZU5	FRIGIDA-like protein; Belongs to the Frigida family.	NAC domain-containing protein.	0.455
CRG98_009417	CRG98_024317	A0A218WQK2	A0A2I0JGA0	FRIGIDA-like protein; Belongs to the Frigida family.	Uncharacterized protein.	0.541
CRG98_009727	CRG98_006334	A0A2I0KMY8	A0A2I0KZU5	Malectin_like domain-containing protein.	NAC domain-containing protein.	0.412
CRG98_009727	CRG98_011316	A0A2I0KMY8	A0A2I0KKH2	Malectin_like domain-containing protein.	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	0.414
CRG98_009727	CRG98_024317	A0A2I0KMY8	A0A2I0JGA0	Malectin_like domain-containing protein.	Uncharacterized protein.	0.490
CRG98_009727	CRG98_028148	A0A2I0KMY8	A0A2I0J5D6	Malectin_like domain-containing protein.	Uncharacterized protein.	0.452
CRG98_009727	CRG98_028149	A0A2I0KMY8	A0A2I0J5C4	Malectin_like domain-containing protein.	PMR5N domain-containing protein.	0.440
CRG98_009727	CRG98_034079	A0A2I0KMY8	A0A2I0INI3	Malectin_like domain-containing protein.	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	0.400
CRG98_009727	CRG98_045637	A0A2I0KMY8	A0A2I0HQV6	Malectin_like domain-containing protein.	Exostosin domain-containing protein; Belongs to the glycosyltransferase 47 family.	0.414
CRG98_009727	CRG98_049946	A0A2I0KMY8	A0A2I0H1I4	Malectin_like domain-containing protein.	PMR5N domain-containing protein.	0.424
CRG98_009727	CRG98_050024	A0A2I0KMY8	A0A2I0GTE0	Malectin_like domain-containing protein.	FRIGIDA-like protein; Belongs to the Frigida family.	0.500
CRG98_011316	CRG98_009727	A0A2I0KKH2	A0A2I0KMY8	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	Malectin_like domain-containing protein.	0.414