STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_021886Protein kinase domain-containing protein. (511 aa)    
Predicted Functional Partners:
CRG98_042236
Uncharacterized protein; Belongs to the cyclin family.
    
 0.793
CRG98_042240
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
 0.793
CRG98_042241
Uncharacterized protein.
    
 0.783
CRG98_020371
Uncharacterized protein; Belongs to the cyclin family.
    
 0.783
CRG98_001764
Protein kinase domain-containing protein.
  
 
0.729
CRG98_020584
CPSF_A domain-containing protein.
    
 
 0.695
CRG98_019484
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.677
CRG98_043457
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
 0.655
CRG98_004333
RPOLD domain-containing protein.
   
 0.633
CRG98_020268
Uncharacterized protein.
    
 0.631
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
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