STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRG98_021326SAWADEE domain-containing protein. (278 aa)    
Predicted Functional Partners:
CRG98_002181
Histone H3; Belongs to the histone H3 family.
    
 
 0.765
CRG98_048550
Histone domain-containing protein.
    
 
 0.765
CRG98_013365
Uncharacterized protein.
    
 
 0.714
CRG98_026484
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.666
CRG98_009421
Uncharacterized protein.
  
   
 0.641
CRG98_013048
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.569
CRG98_047802
Uncharacterized protein.
    
 
 0.555
CRG98_012811
Uncharacterized protein.
      
 0.546
CRG98_019411
Uncharacterized protein.
  
     0.533
CRG98_006759
Histone H3; Belongs to the histone H3 family.
    
 
 0.525
Your Current Organism:
Punica granatum
NCBI taxonomy Id: 22663
Other names: P. granatum, Punica granatum L., granado, grenadier, pomegranate, shi liu, zakuro
Server load: low (26%) [HD]